mmseqs2
Fast and sensitive sequence search and clustering
MMseqs2 (Many-against-Many sequence searching) is a software suite toi search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.
homepage ↗ github: soedinglab/mmseqs2
Available in
| Overlay | Newest | Ebuilds | Last activity | |
|---|---|---|---|---|
| science gitweb ↗ | 13.0-r1 | 1 | 4 d | details › |
Versions & arches
Use flags of 13.0-r1
3 expansion flags (python targets, ABIs, cpu flags…)
- cpu_flags_x86_sse4_1
- cpu_flags_x86_sse2
- cpu_flags_x86_avx2