bambus
Scaffolding Polymorphic Genomes and Metagenomes, a part of AMOS bundle
Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.
homepage ↗homepage ↗ sourceforge: mira-assembler
Available in
| Overlay | Newest | Ebuilds | Last activity | |
|---|---|---|---|---|
| science gitweb ↗ | 2.33-r2 | 1 | 4 d | details › |
Versions & arches
Use flags of 2.33-r2
- perl_features_debug
- perl_features_ithreads
- perl_features_quadmath
- test Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)