NanoCount-1.1.0_p2pypi

download

# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="1.1.0.post2"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads"

HOMEPAGE="https://github.com/a-slide/NanoCount/"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/e8/c5/221c43e50866b04efb1302c975c92c6027c6230a66bf6a4c8541863396c9/nanocount-${REALVERSION}.tar.gz"
SOURCEFILE="nanocount-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES=">=dev-python/tqdm-4.51.0[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.19.4[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	>=dev-python/pandas-1.1.4[${PYTHON_USEDEP}]
	>=dev-python/colorlog-4.1.0[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"