fastp-1.3.6science

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# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit flag-o-matic toolchain-funcs

DESCRIPTION="An ultra-fast all-in-one FASTQ preprocessor"
HOMEPAGE="https://github.com/OpenGene/fastp"
SRC_URI="https://github.com/OpenGene/fastp/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz"

LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"

DEPEND="
	app-arch/libdeflate
	dev-cpp/highway
	dev-libs/isa-l
"
PATCHES=(
	"${FILESDIR}"/${P}-buildflags.patch
)

src_configure() {
	tc-export CC CXX CPP LD AR AS RANLIB
	filter-flags -O2
	filter-ldflags -Wl,--as-needed
}

src_compile() {
	# workaround to skip forced static build on Linux
	emake UNAME_S=
}

src_install() {
	dodir /usr/bin
	emake PREFIX="${ED}"/usr install
}